Package: rDataPipeline 0.60.0

Ryan Field

rDataPipeline: Functions to Interact with the 'FAIR Data Pipeline'

R implementation of the 'FAIR Data Pipeline API'. The 'FAIR Data Pipeline' is intended to enable tracking of provenance of FAIR (findable, accessible and interoperable) data used in epidemiological modelling.

Authors:Sonia Mitchell [aut], Ryan Field [cre, aut]

rDataPipeline_0.60.0.tar.gz
rDataPipeline_0.60.0.zip(r-4.7)rDataPipeline_0.60.0.zip(r-4.6)rDataPipeline_0.60.0.zip(r-4.5)
rDataPipeline_0.60.0.tgz(r-4.6-any)rDataPipeline_0.60.0.tgz(r-4.5-any)
rDataPipeline_0.60.0.tar.gz(r-4.7-any)rDataPipeline_0.60.0.tar.gz(r-4.6-any)
rDataPipeline_0.60.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
rDataPipeline/json (API)
NEWS

# Install 'rDataPipeline' in R:

install.packages('rDataPipeline', repos = c('https://fairdatapipeline.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/fairdatapipeline/rdatapipeline/issues

Pkgdown/docs site:https://www.fairdatapipeline.org

On CRAN:

rhdf5 data-pipeline fair

4.14 score 5 stars 11 scripts 196 downloads 29 exports 53 dependencies

Last updated from:c8689eaf02. Checks:9 OK. Indexed: yes.

Target	Result	Time
linux-devel-x86_64	OK	137
source / vignettes	OK	172
linux-release-x86_64	OK	121
macos-release-arm64	OK	212
macos-oldrel-arm64	OK	183
windows-devel	OK	86
windows-release	OK	87
windows-oldrel	OK	85
wasm-release	OK	113

Exports:add_read add_write create_config fair_init fair_run fdp finalise find_read_match find_write_match findme get_components get_dataproduct get_entry initialise link_read link_write raise_issue raise_issue_config raise_issue_repo raise_issue_script random_hash read_array read_distribution read_estimate read_table write_array write_distribution write_estimate write_table

Dependencies:askpass assertthat biocmake cli clipr configr crayon credentials curl desc dir.expiry dplyr filelock fs generics gert git2r gitcreds glue httr httr2 ini jsonlite lifecycle magrittr mime openssl pillar pkgconfig purrr R6 rappdirs Rcpp RcppTOML rhdf5 rhdf5filters Rhdf5lib rlang rprojroot rstudioapi semver stringi stringr sys tibble tidyselect usethis utf8 vctrs whisker withr yaml zip

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
rDataPipeline	rDataPipeline-package rDataPipeline
add_read	add_read
add_write	add_write
create_config	create_config
fair_init	fair_init
fair_run	fair_run
fdp-class	fdp fdp-class
Finalise code run	finalise
Find matching read aliases in config file	find_read_match
Find matching write aliases in config file	find_write_match
findme	findme
Get H5 file components	get_components
get_dataproduct	get_dataproduct
Return all fields associated with a table entry in the data registry	get_entry
Initialise code run	initialise
Link path to external format data	link_read
Link path for external format data	link_write
raise_issue	raise_issue
Raise issue with config file	raise_issue_config
Raise issue with remote repository	raise_issue_repo
Raise issue with submission script	raise_issue_script
random_hash	random_hash
Read array component from HDF5 file	read_array
Read distribution component from TOML file	read_distribution
Read estimate component from TOML file	read_estimate
Read table component from HDF5 file	read_table
Write array component to HDF5 file	write_array
Write distribution component to TOML file	write_distribution
Write estimate component to TOML file	write_estimate
Write table component to HDF5 file	write_table